2NNT image
Deposition Date 2006-10-24
Release Date 2006-11-14
Last Version Date 2023-12-27
Entry Detail
PDB ID:
2NNT
Keywords:
Title:
General structural motifs of amyloid protofilaments
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Conformers Calculated:
30
Conformers Submitted:
10
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription elongation regulator 1
Gene (Uniprot):TCERG1
Mutagens:Y446F
Chain IDs:A, B, C, D
Chain Length:40
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
General structural motifs of amyloid protofilaments.
Proc.Natl.Acad.Sci.Usa 103 16248 16253 (2006)
PMID: 17060612 DOI: 10.1073/pnas.0607815103

Abstact

Human CA150, a transcriptional activator, binds to and is co-deposited with huntingtin during Huntington's disease. The second WW domain of CA150 is a three-stranded beta-sheet that folds in vitro in microseconds and forms amyloid fibers under physiological conditions. We found from exhaustive alanine scanning studies that fibrillation of this WW domain begins from its denatured conformations, and we identified a subset of residues critical for fibril formation. We used high-resolution magic-angle-spinning NMR studies on site-specific isotopically labeled fibrils to identify abundant long-range interactions between side chains. The distribution of critical residues identified by the alanine scanning and NMR spectroscopy, along with the electron microscopy data, revealed the protofilament repeat unit: a 26-residue non-native beta-hairpin. The structure we report has similarities to the hairpin formed by the A(beta)((1-40)) protofilament, yet also contains closely packed side-chains in a "steric zipper" arrangement found in the cross-beta spine formed from small peptides from the Sup35 prion protein. Fibrillation of unrelated amyloidogenic sequences shows the common feature of zippered repeat units that act as templates for fiber elongation.

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Primary Citation of related structures