2NMQ image
Deposition Date 2006-10-23
Release Date 2006-11-21
Last Version Date 2023-12-27
Entry Detail
PDB ID:
2NMQ
Title:
Simultaneous determination of protein structure and dynamics using rdcs
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Submitted:
1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Immunoglobulin G-binding protein G precursor
Gene (Uniprot):spg
Chain IDs:A
Chain Length:55
Number of Molecules:1
Biological Source:Streptococcus sp. 'group G'
Ligand Molecules
Primary Citation
Simultaneous determination of protein backbone structure and dynamics from residual dipolar couplings
J.Am.Chem.Soc. 128 15100 15101 (2006)
PMID: 17117856 DOI: 10.1021/ja066704b

Abstact

Determination of protein structure classically results in a single average configuration that takes no account of conformational fluctuation. Dynamics are, however, inherently linked to structure and crucial to our understanding of biological function. In this study we have used analytical descriptions of dynamic averaging of residual dipolar couplings (RDCs) to simultaneously determine the backbone structure and dynamics of protein GB3. RDCs alone are used to determine an ultrahigh-resolution structure that compares very closely with a refined X-ray structure (rmsd of 0.34 A overall backbone residues). Dynamic amplitudes reporting on motions up to the millisecond time scale reproduce the main characteristics of dynamics previously determined in conjunction with the crystal structure. The use of RDCs alone allows a bias-free comparison with a purely static approach to structure determination. Extensive cross validation clearly demonstrates that the dynamic description is superior to the static approximation. The demonstration that this level of structural resolution and dynamic detail can be extracted from RDCs supports previous indications that these parameters contain extremely precise information about biomolecular conformational sampling.

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Primary Citation of related structures
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