2NDB image
Deposition Date 2016-05-12
Release Date 2017-09-13
Last Version Date 2024-11-20
Entry Detail
PDB ID:
2NDB
Keywords:
Title:
NMR structure of omega-agatoxin IVA in DPC micelles
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Omega-agatoxin-Aa4a
Chain IDs:A
Chain Length:49
Number of Molecules:1
Biological Source:Agelenopsis aperta
Ligand Molecules
Primary Citation
Structure-activity relationships of omega-Agatoxin IVA in lipid membranes
Biochem. Biophys. Res. Commun. 482 170 175 (2017)
PMID: 27838299 DOI: 10.1016/j.bbrc.2016.11.025

Abstact

To analyze structural features of ω-Aga IVA, a gating modifier toxin from spider venom, we here investigated the NMR solution structure of ω-Aga IVA within DPC micelles. Under those conditions, the Cys-rich central region of ω-Aga IVA still retains the inhibitor Cys knot motif with three short antiparallel β-strands seen in water. However, 15N HSQC spectra of ω-Aga IVA within micelles revealed that there are radical changes to the toxin's C-terminal tail and several loops upon binding to micelles. The C-terminal tail of ω-Aga IVA appears to assume a β-turn like conformation within micelles, though it is disordered in water. Whole-cell patch clamp studies with several ω-Aga IVA analogs indicate that both the hydrophobic C-terminal tail and an Arg patch in the core region of ω-Aga IVA are critical for Cav2.1 blockade. These results suggest that the membrane environment stabilizes the structure of the toxin, enabling it to act in a manner similar to other gating modifier toxins, though its mode of interaction with the membrane and the channel is unique.

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Primary Citation of related structures