2ND1 image
Deposition Date 2016-04-19
Release Date 2016-06-29
Last Version Date 2024-05-01
Entry Detail
PDB ID:
2ND1
Keywords:
TRANSCRIPTION/TRANSFERASE
Title:
Solution NMR structures of BRD4 ET domain in complex with NSD3_3 peptide
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
SOLUTION NMR
Conformers Calculated:
200
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
2ND1 validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Bromodomain-containing protein 4
Gene (Uniprot):BRD4
Chain IDs:A
Chain Length:83
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:O60885 Pfam ID:PF17035
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone-lysine N-methyltransferase NSD3
Gene (Uniprot):NSD3
Chain IDs:B
Chain Length:13
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9BZ95 EC:2.1.1.356
Ligand Molecules
NA
Primary Citation
Structural Mechanism of Transcriptional Regulator NSD3 Recognition by the ET Domain of BRD4.
Structure 24 1201 1208 (2016)
PMID: 27291650 DOI: 10.1016/j.str.2016.04.019

Abstact

The bromodomains and extra-terminal domain (BET) proteins direct gene transcription in chromatin, and represent new drug targets for cancer and inflammation. Here we report that the ET domain of the BET protein BRD4 recognizes an amphipathic protein sequence motif through establishing a two-strand antiparallel β sheet anchored on a hydrophobic cleft of the three-helix bundle. This structural mechanism likely explains BRD4 interactions with numerous cellular and viral proteins such as Kaposi's sarcoma-associated herpesvirus latency-associated nuclear antigen, and NSD3 whose interaction with BRD4 via this ET domain mechanism is essential for acute myeloid leukemia maintenance.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
2ND1