2N5Y image
Deposition Date 2015-08-03
Release Date 2016-09-28
Last Version Date 2023-11-15
Entry Detail
PDB ID:
2N5Y
Title:
Solution NMR structure of octyl-tridecaptin A1 in DPC micelles containing Gram-negative lipid II
Biological Source:
Source Organism:
(Taxon ID: )
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
target function
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Octyl-tridecaptin A1
Chain IDs:A
Chain Length:13
Number of Molecules:1
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
DAB A ALA 2,4-DIAMINOBUTYRIC ACID
Ligand Molecules
Primary Citation
Antimicrobial lipopeptide tridecaptin A1 selectively binds to Gram-negative lipid II.
Proc.Natl.Acad.Sci.USA 113 11561 11566 (2016)
PMID: 27688760 DOI: 10.1073/pnas.1608623113

Abstact

Tridecaptin A1 (TriA1) is a nonribosomal lipopeptide with selective antimicrobial activity against Gram-negative bacteria. Here we show that TriA1 exerts its bactericidal effect by binding to the bacterial cell-wall precursor lipid II on the inner membrane, disrupting the proton motive force. Biochemical and biophysical assays show that binding to the Gram-negative variant of lipid II is required for membrane disruption and that only the proton gradient is dispersed. The NMR solution structure of TriA1 in dodecylphosphocholine micelles with lipid II has been determined, and molecular modeling was used to provide a structural model of the TriA1-lipid II complex. These results suggest that TriA1 kills Gram-negative bacteria by a mechanism of action using a lipid-II-binding motif.

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Primary Citation of related structures