2N1O image
Deposition Date 2015-04-13
Release Date 2015-10-28
Last Version Date 2024-10-30
Entry Detail
PDB ID:
2N1O
Title:
PIN1 WW domain in complex with a phosphorylated CPEB1 derived peptide
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
120
Conformers Submitted:
19
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1
Gene (Uniprot):PIN1
Chain IDs:A
Chain Length:33
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Cytoplasmic polyadenylation element-binding protein 1
Gene (Uniprot):CPEB1
Chain IDs:B
Chain Length:8
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP B SER PHOSPHOSERINE
Ligand Molecules
Primary Citation
Structural Analysis of the Pin1-CPEB1 interaction and its potential role in CPEB1 degradation.
Sci Rep 5 14990 14990 (2015)
PMID: 26456073 DOI: 10.1038/srep14990

Abstact

The Cytoplasmic Polyadenylation Element Binding proteins are RNA binding proteins involved in the translational regulation of mRNA. During cell cycle progression, CPEB1 is labeled for degradation by phosphorylation-dependent ubiquitination by the SCF(β-TrCP) ligase. The peptidyl-prolyl isomerase Pin1 plays a key role in CPEB1 degradation. Conditioned by the cell cycle stage, CPEB1 and Pin1 interactions occur in a phosphorylation-independent or -dependent manner. CPEB1 contains six potential phosphorylatable Pin1 binding sites. Using a set of biophysical techniques, we discovered that the pS210 site is unique, since it displays binding activity not only to the WW domain but also to the prolyl-isomerase domain of Pin1. The NMR structure of the Pin1 WW-CPEB1 pS210 (PDB ID: 2n1o) reveals that the pSerPro motif is bound in trans configuration through contacts with amino acids located in the first turn of the WW domain and the conserved tryptophan in the β3-strand. NMR relaxation analyses of Pin1 suggest that inter-domain flexibility is conferred by the modulation of the interaction with peptides containing the pS210 site, which is essential for degradation.

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Primary Citation of related structures