ISDA

Deposition Date 2015-03-04

Release Date 2015-04-15

Last Version Date 2025-03-26

Entry Detail

PDB ID:

2N09

Keywords:

DE NOVO PROTEIN

Title:

NMR structure of a short hydrophobic 11mer peptide in DMSO-d6/H2O (1:3) solution

Biological Source:

Source Organism:

(Taxon ID: ) (Taxon ID: )

Method Details:

Experimental Method:

SOLUTION NMR

Conformers Calculated:

Conformers Submitted:

Selection Criteria:

structures with the lowest energy

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Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:Short hydrophobic peptide with cyclic constraints
Chain IDs:A
Chain Length:12
Number of Molecules:1
Biological Source:

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
AIB	A	ALA	ALPHA-AMINOISOBUTYRIC ACID

Ligand Molecules

Primary Citation

Short Hydrophobic Peptides with Cyclic Constraints Are Potent Glucagon-like Peptide-1 Receptor (GLP-1R) Agonists.

Hoang, H.N, Song, K, Hill, T.A, Derksen, D.R, Edmonds, D.J, Kok, W.M, Limberakis, C, Liras, S, Loria, P.M, Mascitti, V, Mathiowetz, A.M, Mitchell, J.M, Piotrowski, D.W, Price, D.A, Stanton, R.V, Suen, J.Y, Withka, J.M, Griffith, D.A, Fairlie, D.P.Show

J.Med.Chem. 58 4080 4085 (2015)

PMID: 25839426 DOI: 10.1021/acs.jmedchem.5b00166

Abstact

Cyclic constraints are incorporated into an 11-residue analogue of the N-terminus of glucagon-like peptide-1 (GLP-1) to investigate effects of structure on agonist activity. Cyclization through linking side chains of residues 2 and 5 or 5 and 9 produced agonists at nM concentrations in a cAMP assay. 2D NMR and CD spectra revealed an N-terminal β-turn and a C-terminal helix that differentially influenced affinity and agonist potency. These structures can inform development of small molecule agonists of the GLP-1 receptor to treat type 2 diabetes.

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Primary Citation of related structures