2MYQ image
Deposition Date 2015-01-30
Release Date 2015-07-08
Last Version Date 2024-11-20
Entry Detail
PDB ID:
2MYQ
Title:
NMR structure of an Odin-Sam1 fragment
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
target function
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ankyrin repeat and SAM domain-containing protein 1A
Gene (Uniprot):ANKS1A
Chain IDs:A
Chain Length:45
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Peptide Fragments of Odin-Sam1: Conformational Analysis and Interaction Studies with EphA2-Sam.
Chembiochem 16 1629 1636 (2015)
PMID: 26120079 DOI: 10.1002/cbic.201500197

Abstact

Odin is a protein belonging to the ANKS family, and has two tandem Sam domains. The first, Odin-Sam1, binds to the Sam domain of the EphA2 receptor (EphA2-Sam); this interaction could be crucial for the regulation of receptor endocytosis and might have an impact on cancer. Odin-Sam1 associates with EphA2-Sam by adopting a "mid-loop/end-helix" model. In this study three peptide sequences, encompassing the mid-loop interacting portion of Odin-Sam1 and its C-terminal α5 helix, were designed. Their conformational properties were analyzed by CD and NMR. In addition, their abilities to interact with EphA2-Sam were investigated by SPR studies. The peptides adopt a predominantly disordered state in aqueous buffer, but a higher helical content is evident in the presence of the cosolvent trifluoroethanol. Dissociation constants towards EphA2-Sam were in the high micromolar range. The structural findings suggest further routes for the design of potential anti-cancer therapeutics as inhibitors of EphA2-Sam heterotypic interactions.

Legend

Protein

Chemical

Disease

Primary Citation of related structures