2MX8 image
Deposition Date 2014-12-17
Release Date 2015-08-19
Last Version Date 2024-10-09
Entry Detail
PDB ID:
2MX8
Title:
NMR structure of N-terminal domain from A. ventricosus minor ampullate spidroin (MiSp) at pH 7.2
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
target function
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Minor ampullate spidroin
Chain IDs:A
Chain Length:133
Number of Molecules:1
Biological Source:Araneus ventricosus
Ligand Molecules
Primary Citation
Diversified Structural Basis of a Conserved Molecular Mechanism for pH-Dependent Dimerization in Spider Silk N-Terminal Domains.
Chembiochem 16 1720 1724 (2015)
PMID: 26033527 DOI: 10.1002/cbic.201500263

Abstact

Conversion of spider silk proteins from soluble dope to insoluble fibers involves pH-dependent dimerization of the N-terminal domain (NT). This conversion is tightly regulated to prevent premature precipitation and enable rapid silk formation at the end of the duct. Three glutamic acid residues that mediate this process in the NT from Euprosthenops australis major ampullate spidroin 1 are well conserved among spidroins. However, NTs of minor ampullate spidroins from several species, including Araneus ventricosus ((Av)MiSp NT), lack one of the glutamic acids. Here we investigate the pH-dependent structural changes of (Av)MiSp NT, revealing that it uses the same mechanism but involves a non-conserved glutamic acid residue instead. Homology modeling of the structures of other MiSp NTs suggests that these harbor different compensatory residues. This indicates that, despite sequence variations, the molecular mechanism underlying pH-dependent dimerization of NT is conserved among different silk types.

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Primary Citation of related structures