2MSG image
Entry Detail
PDB ID:
2MSG
Title:
Solid-state NMR structure of ubiquitin
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2014-08-04
Release Date:
2015-02-18
Method Details:
Experimental Method:
Conformers Calculated:
1000
Conformers Submitted:
10
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ubiquitin
Chain IDs:A
Chain Length:72
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural heterogeneity in microcrystalline ubiquitin studied by solid-state NMR.
Protein Sci. 24 592 598 (2015)
PMID: 25644665 DOI: 10.1002/pro.2654

Abstact

By applying [1-(13) C]- and [2-(13) C]-glucose labeling schemes to the folded globular protein ubiquitin, a strong reduction of spectral crowding and increase in resolution in solid-state NMR (ssNMR) spectra could be achieved. This allowed spectral resonance assignment in a straightforward manner and the collection of a wealth of long-range distance information. A high precision solid-state NMR structure of microcrystalline ubiquitin was calculated with a backbone rmsd of 1.57 to the X-ray structure and 1.32 Å to the solution NMR structure. Interestingly, we can resolve structural heterogeneity as the presence of three slightly different conformations. Structural heterogeneity is most significant for the loop region β1-β2 but also for β-strands β1, β2, β3, and β5 as well as for the loop connecting α1 and β3. This structural polymorphism observed in the solid-state NMR spectra coincides with regions that showed dynamics in solution NMR experiments on different timescales.

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Primary Citation of related structures