2MP2 image
Deposition Date 2014-05-09
Release Date 2014-07-02
Last Version Date 2024-05-01
Entry Detail
PDB ID:
2MP2
Keywords:
Title:
Solution structure of SUMO dimer in complex with SIM2-3 from RNF4
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
60
Conformers Submitted:
10
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Small ubiquitin-related modifier 3
Gene (Uniprot):SUMO3
Chain IDs:A
Chain Length:82
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Small ubiquitin-related modifier 3
Gene (Uniprot):SUMO3
Chain IDs:B
Chain Length:90
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase RNF4
Gene (Uniprot):Rnf4
Chain IDs:C
Chain Length:25
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structural insight into SUMO chain recognition and manipulation by the ubiquitin ligase RNF4.
Nat Commun 5 4217 4217 (2014)
PMID: 24969970 DOI: 10.1038/ncomms5217

Abstact

The small ubiquitin-like modifier (SUMO) can form polymeric chains that are important signals in cellular processes such as meiosis, genome maintenance and stress response. The SUMO-targeted ubiquitin ligase RNF4 engages with SUMO chains on linked substrates and catalyses their ubiquitination, which targets substrates for proteasomal degradation. Here we use a segmental labelling approach combined with solution nuclear magnetic resonance (NMR) spectroscopy and biochemical characterization to reveal how RNF4 manipulates the conformation of the SUMO chain, thereby facilitating optimal delivery of the distal SUMO domain for ubiquitin transfer.

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Primary Citation of related structures