2MH5 image
Entry Detail
PDB ID:
2MH5
Keywords:
Title:
Structure and NMR assignments of lantibiotic NAI-107 in DPC micelles
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2013-11-18
Release Date:
2014-03-05
Method Details:
Experimental Method:
Conformers Calculated:
80
Conformers Submitted:
20
Selection Criteria:
structures with the least restraint violations
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Lantibiotic 107891
Chain IDs:A
Chain Length:24
Number of Molecules:1
Biological Source:Microbispora
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
5CW A TRP POST-TRANSLATIONAL MODIFICATION
DAL A SER POST-TRANSLATIONAL MODIFICATION
DBU A THR POST-TRANSLATIONAL MODIFICATION
DHA A SER POST-TRANSLATIONAL MODIFICATION
TEE A CYS POST-TRANSLATIONAL MODIFICATION
Ligand Molecules
Peptide-like Molecules
PRD_001219
Primary Citation
The Lantibiotic NAI-107 Binds to Bactoprenol-bound Cell Wall Precursors and Impairs Membrane Functions.
J.Biol.Chem. 289 12063 12076 (2014)
PMID: 24627484 DOI: 10.1074/jbc.M113.537449

Abstact

The lantibiotic NAI-107 is active against Gram-positive bacteria including vancomycin-resistant enterococci and methicillin-resistant Staphylococcus aureus. To identify the molecular basis of its potency, we studied the mode of action in a series of whole cell and in vitro assays and analyzed structural features by nuclear magnetic resonance (NMR). The lantibiotic efficiently interfered with late stages of cell wall biosynthesis and induced accumulation of the soluble peptidoglycan precursor UDP-N-acetylmuramic acid-pentapeptide (UDP-MurNAc-pentapeptide) in the cytoplasm. Using membrane preparations and a complete cascade of purified, recombinant late stage peptidoglycan biosynthetic enzymes (MraY, MurG, FemX, PBP2) and their respective purified substrates, we showed that NAI-107 forms complexes with bactoprenol-pyrophosphate-coupled precursors of the bacterial cell wall. Titration experiments indicate that first a 1:1 stoichiometric complex occurs, which then transforms into a 2:1 (peptide: lipid II) complex, when excess peptide is added. Furthermore, lipid II and related molecules obviously could not serve as anchor molecules for the formation of defined and stable nisin-like pores, however, slow membrane depolarization was observed after NAI-107 treatment, which could contribute to killing of the bacterial cell.

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