2MBX image
Deposition Date 2013-08-07
Release Date 2014-08-20
Last Version Date 2024-05-15
Entry Detail
PDB ID:
2MBX
Title:
Structure, dynamics and stability of allergen cod parvalbumin Gad m 1 by solution and high-pressure NMR.
Biological Source:
Source Organism:
Gadus morhua (Taxon ID: 8049)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
200
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Parvalbumin beta
Gene (Uniprot):pvalb2
Chain IDs:A
Chain Length:109
Number of Molecules:1
Biological Source:Gadus morhua
Ligand Molecules
Primary Citation
Solution and high-pressure NMR studies of the structure, dynamics, and stability of the cross-reactive allergenic cod parvalbumin Gad m 1.
Proteins 82 3032 3042 (2014)
PMID: 25116395 DOI: 10.1002/prot.24664

Abstact

Beta-parvalbumins from different fish species have been identified as the main elicitors of IgE-mediated reactions in fish-allergic individuals. Here, we report for the first time the NMR determination of the structure and dynamics of the major Atlantic cod (Gadus morhua) allergen Gad m 1 and compare them with other known parvalbumins. Although the Gad m 1 structure and accessibility of putative IgE epitopes are similar to parvalbumins in mackerel and carp, the charge distribution at the putative epitopes is different. The determination of the Gad m 1 structure contributes to a better understanding of cross-reactivity among fish parvalbumins. In addition, the high-pressure NMR and temperature variation experiments revealed the important contribution of the AB motif and other regions to the protein folding. This structural information could assist the future identification of hot spots for targeted mutations to develop hypoallergenic Ca(2+) -free forms for potential use in immunotherapy.

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Primary Citation of related structures