2MA9 image
Entry Detail
PDB ID:
2MA9
Title:
HIV-1 Vif SOCS-box and Elongin BC solution structure
Biological Source:
PDB Version:
Deposition Date:
2013-07-01
Release Date:
2013-12-11
Method Details:
Experimental Method:
Conformers Calculated:
200
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Virion infectivity factor
Chain IDs:A
Chain Length:36
Number of Molecules:1
Biological Source:Human immunodeficiency virus type 1
Polymer Type:polypeptide(L)
Description:Transcription elongation factor B polypeptide 2
Chain IDs:B
Chain Length:118
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Transcription elongation factor B polypeptide 1
Chain IDs:C
Chain Length:91
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Insight into the HIV-1 Vif SOCS-box-ElonginBC interaction.
OPEN BIOLOGY 3 130100 130100 (2013)
PMID: 24225024 DOI: 10.1098/rsob.130100

Abstact

The HIV-1 viral infectivity factor (Vif) neutralizes cell-encoded antiviral APOBEC3 proteins by recruiting a cellular ElonginB (EloB)/ElonginC (EloC)/Cullin5-containing ubiquitin ligase complex, resulting in APOBEC3 ubiquitination and proteolysis. The suppressors-of-cytokine-signalling-like domain (SOCS-box) of HIV-1 Vif is essential for E3 ligase engagement, and contains a BC box as well as an unusual proline-rich motif. Here, we report the NMR solution structure of the Vif SOCS-ElonginBC (EloBC) complex. In contrast to SOCS-boxes described in other proteins, the HIV-1 Vif SOCS-box contains only one α-helical domain followed by a β-sheet fold. The SOCS-box of Vif binds primarily to EloC by hydrophobic interactions. The functionally essential proline-rich motif mediates a direct but weak interaction with residues 101-104 of EloB, inducing a conformational change from an unstructured state to a structured state. The structure of the complex and biophysical studies provide detailed insight into the function of Vif's proline-rich motif and reveal novel dynamic information on the Vif-EloBC interaction.

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Primary Citation of related structures