2M7R image
Deposition Date 2013-04-29
Release Date 2014-02-19
Last Version Date 2023-06-14
Entry Detail
PDB ID:
2M7R
Title:
Nmda receptor antagonist, conantokin bk-b, nmr, 20 structure
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
1000
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:CONANTOKIN BK-B
Chain IDs:A
Chain Length:10
Number of Molecules:1
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CGU A GLU GAMMA-CARBOXY-GLUTAMIC ACID
Ligand Molecules
Peptide-like Molecules
PRD_001185
Primary Citation
From molecular phylogeny towards differentiating pharmacology for NMDA receptor subtypes.
Toxicon 81C 67 79 (2014)
PMID: 24508768 DOI: 10.1016/j.toxicon.2014.01.016

Abstact

In order to decode the roles that N-methyl-D-aspartate (NMDA) receptors play in excitatory neurotransmission, synaptic plasticity, and neuropathologies, there is need for ligands that differ in their subtype selectivity. The conantokin family of Conus peptides is the only group of peptidic natural products known to target NMDA receptors. Using a search that was guided by phylogeny, we identified new conantokins from the marine snail Conus bocki that complement the current repertoire of NMDA receptor pharmacology. Channel currents measured in Xenopus oocytes demonstrate conantokins conBk-A, conBk-B, and conBk-C have highest potencies for NR2D containing receptors, in contrast to previously characterized conantokins that preferentially block NR2B containing NMDA receptors. Conantokins are rich in γ-carboxyglutamate, typically 17-34 residues, and adopt helical structure in a calcium-dependent manner. As judged by CD spectroscopy, conBk-C adopts significant helical structure in a calcium ion-dependent manner, while calcium, on its own, appears insufficient to stabilize helical conformations of conBk-A or conBk-B. Molecular dynamics simulations help explain the differences in calcium-stabilized structures. Two-dimensional NMR spectroscopy shows that the 9-residue conBk-B is relatively unstructured but forms a helix in the presence of TFE and calcium ions that is similar to other conantokin structures. These newly discovered conantokins hold promise that further exploration of small peptidic antagonists will lead to a set of pharmacological tools that can be used to characterize the role of NMDA receptors in nervous system function and disease.

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Primary Citation of related structures