2M6A image
Deposition Date 2013-03-28
Release Date 2014-04-02
Last Version Date 2024-10-30
Entry Detail
PDB ID:
2M6A
Title:
NMR spatial structure of the antimicrobial peptide Tk-Amp-X2
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Submitted:
10
Selection Criteria:
structures with the least restraint violations
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Predicted protein
Chain IDs:A
Chain Length:28
Number of Molecules:1
Biological Source:Hordeum vulgare subsp. vulgare
Ligand Molecules
Primary Citation
Structural similarity between defense peptide from wheat and scorpion neurotoxin permits rational functional design
J.Biol.Chem. 289 14331 14340 (2014)
PMID: 24671422 DOI: 10.1074/jbc.M113.530477

Abstact

In this study, we present the spatial structure of the wheat antimicrobial peptide (AMP) Tk-AMP-X2 studied using NMR spectroscopy. This peptide was found to adopt a disulfide-stabilized α-helical hairpin fold and therefore belongs to the α-hairpinin family of plant defense peptides. Based on Tk-AMP-X2 structural similarity to cone snail and scorpion potassium channel blockers, a mutant molecule, Tk-hefu, was engineered by incorporating the functionally important residues from κ-hefutoxin 1 onto the Tk-AMP-X2 scaffold. The designed peptide contained the so-called essential dyad of amino acid residues significant for channel-blocking activity. Electrophysiological studies showed that although the parent peptide Tk-AMP-X2 did not present any activity against potassium channels, Tk-hefu blocked Kv1.3 channels with similar potency (IC50 ∼ 35 μm) to κ-hefutoxin 1 (IC50 ∼ 40 μm). We conclude that α-hairpinins are attractive in their simplicity as structural templates, which may be used for functional engineering and drug design.

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Chemical

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Primary Citation of related structures
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