2M59 image
Deposition Date 2013-02-19
Release Date 2014-03-12
Last Version Date 2024-05-15
Entry Detail
PDB ID:
2M59
Keywords:
Title:
Spatial structure of dimeric VEGFR2 membrane domain in DPC micelles
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
10
Selection Criteria:
target function
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Vascular endothelial growth factor receptor 2
Gene (Uniprot):KDR
Chain IDs:A, B
Chain Length:37
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural and functional characterization of alternative transmembrane domain conformations in VEGF receptor 2 activation.
Structure 22 1077 1089 (2014)
PMID: 24980797 DOI: 10.1016/j.str.2014.05.010

Abstact

Transmembrane signaling by receptor tyrosine kinases (RTKs) entails ligand-mediated dimerization and structural rearrangement of the extracellular domains. RTK activation also depends on the specific orientation of the transmembrane domain (TMD) helices, as suggested by pathogenic, constitutively active RTK mutants. Such mutant TMDs carry polar amino acids promoting stable transmembrane helix dimerization, which is essential for kinase activation. We investigated the effect of polar amino acids introduced into the TMD of vascular endothelial growth factor receptor 2, regulating blood vessel homeostasis. Two mutants showed constitutive kinase activity, suggesting that precise TMD orientation is mandatory for kinase activation. Nuclear magnetic resonance spectroscopy revealed that TMD helices in activated constructs were rotated by 180° relative to the interface of the wild-type conformation, confirming that ligand-mediated receptor activation indeed results from transmembrane helix rearrangement. A molecular dynamics simulation confirmed the transmembrane helix arrangement of wild-type and mutant TMDs revealed by nuclear magnetic resonance spectroscopy.

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Primary Citation of related structures