2M2Q image
Entry Detail
PDB ID:
2M2Q
Title:
Solution structure of MCh-1: A novel inhibitor cystine knot peptide from Momordica charantia
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2013-01-01
Release Date:
2013-11-06
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Inhibitor cystine knot peptide MCh-1
Chain IDs:A
Chain Length:32
Number of Molecules:1
Biological Source:Momordica charantia
Ligand Molecules
Primary Citation
Novel Inhibitor Cystine Knot Peptides from Momordica charantia.
Plos One 8 e75334 e75334 (2013)
PMID: 24116036 DOI: 10.1371/journal.pone.0075334

Abstact

Two new peptides, MCh-1 and MCh-2, along with three known trypsin inhibitors (MCTI-I, MCTI-II and MCTI-III), were isolated from the seeds of the tropical vine Momordica charantia. The sequences of the peptides were determined using mass spectrometry and NMR spectroscopy. Using a strategy involving partial reduction and stepwise alkylation of the peptides, followed by enzymatic digestion and tandem mass spectrometry sequencing, the disulfide connectivity of MCh-1 was elucidated to be CysI-CysIV, CysII-CysV and CysIII-CysVI. The three-dimensional structures of MCh-1 and MCh-2 were determined using NMR spectroscopy and found to contain the inhibitor cystine knot (ICK) motif. The sequences of the novel peptides differ significantly from peptides previously isolated from this plant. Therefore, this study expands the known peptide diversity in M. charantia and the range of sequences that can be accommodated by the ICK motif. Furthermore, we show that a stable two-disulfide intermediate is involved in the oxidative folding of MCh-1. This disulfide intermediate is structurally homologous to the proposed ancestral fold of ICK peptides, and provides a possible pathway for the evolution of this structural motif, which is highly prevalent in nature.

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