2M2G image
Deposition Date 2012-12-20
Release Date 2013-02-27
Last Version Date 2023-06-14
Entry Detail
PDB ID:
2M2G
Title:
Solution structure of the antimicrobial peptide [Aba3,16]BTD-2
Biological Source:
Source Organism:
(Taxon ID: )
Method Details:
Experimental Method:
Conformers Calculated:
50
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:[Aba3,16]BTD-2
Chain IDs:A
Chain Length:18
Number of Molecules:1
Biological Source:
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ABA A ALA ALPHA-AMINOBUTYRIC ACID
Ligand Molecules
Peptide-like Molecules
PRD_000998
Primary Citation
The cyclic cystine ladder in theta-defensins is important for structure and stability, but not antibacterial activity.
J.Biol.Chem. 288 10830 10840 (2013)
PMID: 23430740 DOI: 10.1074/jbc.M113.451047

Abstact

θ-Defensins are ribosomally synthesized cyclic peptides found in the leukocytes of some primate species and have promising applications as antimicrobial agents and scaffolds for peptide drugs. The cyclic cystine ladder motif, comprising a cyclic peptide backbone and three parallel disulfide bonds, is characteristic of θ-defensins. In this study, we explore the role of the cyclic peptide backbone and cystine ladder in the structure, stability, and activity of θ-defensins. θ-Defensin analogues with different numbers and combinations of disulfide bonds were synthesized and characterized in terms of their NMR solution structures, serum and thermal stabilities, and their antibacterial and membrane-binding activities. Whereas the structures and stabilities of the peptides were primarily dependent on the number and position of the disulfide bonds, their antibacterial and membrane-binding properties were dependent on the cyclic backbone. The results provide insights into the mechanism of action of θ-defensins and illustrate the potential of θ-defensin analogues as scaffolds for peptide drug design.

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Primary Citation of related structures