2LXP image
Deposition Date 2012-08-30
Release Date 2013-08-28
Last Version Date 2024-05-15
Entry Detail
PDB ID:
2LXP
Keywords:
Title:
NMR structure of two domains in ubiquitin ligase gp78, RING and G2BR, bound to its conjugating enzyme Ube2g
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
200
Conformers Submitted:
20
Selection Criteria:
Lowest Haddock Scores
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-conjugating enzyme E2 G2
Gene (Uniprot):UBE2G2
Chain IDs:A
Chain Length:164
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase AMFR
Gene (Uniprot):AMFR
Chain IDs:B
Chain Length:27
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase AMFR
Gene (Uniprot):AMFR
Chain IDs:C
Chain Length:58
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Allosteric regulation of E2:E3 interactions promote a processive ubiquitination machine.
Embo J. 32 2504 2516 (2013)
PMID: 23942235 DOI: 10.1038/emboj.2013.174

Abstact

RING finger proteins constitute the large majority of ubiquitin ligases (E3s) and function by interacting with ubiquitin-conjugating enzymes (E2s) charged with ubiquitin. How low-affinity RING-E2 interactions result in highly processive substrate ubiquitination is largely unknown. The RING E3, gp78, represents an excellent model to study this process. gp78 includes a high-affinity secondary binding region for its cognate E2, Ube2g2, the G2BR. The G2BR allosterically enhances RING:Ube2g2 binding and ubiquitination. Structural analysis of the RING:Ube2g2:G2BR complex reveals that a G2BR-induced conformational effect at the RING:Ube2g2 interface is necessary for enhanced binding of RING to Ube2g2 or Ube2g2 conjugated to Ub. This conformational effect and a key ternary interaction with conjugated ubiquitin are required for ubiquitin transfer. Moreover, RING:Ube2g2 binding induces a second allosteric effect, disrupting Ube2g2:G2BR contacts, decreasing affinity and facilitating E2 exchange. Thus, gp78 is a ubiquitination machine where multiple E2-binding sites coordinately facilitate processive ubiquitination.

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Primary Citation of related structures