2LXH image
Entry Detail
PDB ID:
2LXH
Keywords:
Title:
NMR structure of the RING domain in ubiquitin ligase gp78
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2012-08-27
Release Date:
2013-08-28
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:E3 ubiquitin-protein ligase AMFR
Chain IDs:A (auth: C)
Chain Length:81
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Allosteric regulation of E2:E3 interactions promote a processive ubiquitination machine.
Embo J. 32 2504 2516 (2013)
PMID: 23942235 DOI: 10.1038/emboj.2013.174

Abstact

RING finger proteins constitute the large majority of ubiquitin ligases (E3s) and function by interacting with ubiquitin-conjugating enzymes (E2s) charged with ubiquitin. How low-affinity RING-E2 interactions result in highly processive substrate ubiquitination is largely unknown. The RING E3, gp78, represents an excellent model to study this process. gp78 includes a high-affinity secondary binding region for its cognate E2, Ube2g2, the G2BR. The G2BR allosterically enhances RING:Ube2g2 binding and ubiquitination. Structural analysis of the RING:Ube2g2:G2BR complex reveals that a G2BR-induced conformational effect at the RING:Ube2g2 interface is necessary for enhanced binding of RING to Ube2g2 or Ube2g2 conjugated to Ub. This conformational effect and a key ternary interaction with conjugated ubiquitin are required for ubiquitin transfer. Moreover, RING:Ube2g2 binding induces a second allosteric effect, disrupting Ube2g2:G2BR contacts, decreasing affinity and facilitating E2 exchange. Thus, gp78 is a ubiquitination machine where multiple E2-binding sites coordinately facilitate processive ubiquitination.

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Primary Citation of related structures