2LS6 image
Deposition Date 2012-04-20
Release Date 2013-05-01
Last Version Date 2024-05-01
Entry Detail
PDB ID:
2LS6
Keywords:
Title:
Solution NMR Structure of a Non-canonical galactose-binding CBM32 from Clostridium perfringens
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
200
Conformers Submitted:
21
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Hyaluronoglucosaminidase
Chain IDs:A
Chain Length:164
Number of Molecules:1
Biological Source:Clostridium perfringens
Ligand Molecules
Primary Citation
An unusual mode of galactose recognition by a family 32 carbohydrate-binding module.
J.Mol.Biol. 426 869 880 (2014)
PMID: 24326248 DOI: 10.1016/j.jmb.2013.11.029

Abstact

Carbohydrate-binding modules (CBMs) are ancillary modules commonly associated with carbohydrate-active enzymes (CAZymes) that function to mediate the adherence of the parent enzyme to its carbohydrate substrates. CBM family 32 (CBM32) is one of the most diverse CBM families, whose members are commonly found in bacterial CAZymes that modify eukaryotic glycans. One such example is the putative μ-toxin, CpGH84A, of the family 84 glycoside hydrolases, which comprises an N-terminal putative β-N-acetylglucosaminidase catalytic module and four tandem CBM32s. Here, we report a unique mode of galactose recognition by the first CBM32, CBM32-1 from CpGH84A. Solution NMR-based analyses of CpGH84A CBM32-1 indicate a divergent subset of residues, located in ordered loops at the apex of the CBM, conferring specificity for the galacto-configured sugars galactose, GalNAc, and LacNAc that differs from those of the canonical galactose-binding CBM32s. This study showcases the impressive variability in ligand binding by this CBM family and offers insight into the growing role of these modules in the interaction of CAZymes with eukaryotic glycans.

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Primary Citation of related structures