2LPX image
Deposition Date 2012-02-20
Release Date 2012-03-07
Last Version Date 2024-05-15
Entry Detail
PDB ID:
2LPX
Title:
Solution Structure of Strawberry Allergen Fra a 1e
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
120
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Major strawberry allergen Fra a 1-E
Gene (Uniprot):FRAA1E.1
Chain IDs:A
Chain Length:170
Number of Molecules:1
Biological Source:Fragaria x ananassa
Ligand Molecules
Primary Citation
Solution structure of the strawberry allergen Fra a 1.
Biosci.Rep. 32 567 575 (2012)
PMID: 22913709 DOI: 10.1042/BSR20120058

Abstact

The PR10 family protein Fra a 1E from strawberry (Fragaria x ananassa) is down-regulated in white strawberry mutants, and transient RNAi (RNA interference)-mediated silencing experiments confirmed that Fra a 1 is involved in fruit pigment synthesis. In the present study, we determined the solution structure of Fra a 1E. The protein fold is identical with that of other members of the PR10 protein family and consists of a seven-stranded antiparallel β-sheet, two short V-shaped α-helices and a long C-terminal α-helix that encompass a hydrophobic pocket. Whereas Fra a 1E contains the glycine-rich loop that is highly conserved throughout the protein family, the volume of the hydrophobic pocket and the size of its entrance are much larger than expected. The three-dimensional structure may shed some light on its physiological function and may help to further understand the role of PR10 proteins in plants.

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Primary Citation of related structures