ISDA

Deposition Date 2012-01-26

Release Date 2012-05-23

Last Version Date 2024-05-15

Entry Detail

PDB ID:

2LOQ

Keywords:

MEMBRANE PROTEIN

Title:

Backbone structure of human membrane protein FAM14B (Interferon alpha-inducible protein 27-like protein 1)

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

CELL-FREE SYNTHESIS

Method Details:

Experimental Method:

SOLUTION NMR

Conformers Calculated:

200

Conformers Submitted:

Selection Criteria:

target function

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Interferon alpha-inducible protein 27-like protein 1
Gene (Uniprot):IFI27L1
Chain IDs:A
Chain Length:113
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q96BM0 Pfam ID:PF06140

Ligand Molecules

Primary Citation

Facile backbone structure determination of human membrane proteins by NMR spectroscopy.

Klammt, C, Maslennikov, I, Bayrhuber, M, Eichmann, C, Vajpai, N, Chiu, E.J, Blain, K.Y, Esquivies, L, Kwon, J.H, Balana, B, Pieper, U, Sali, A, Slesinger, P.A, Kwiatkowski, W, Riek, R, Choe, S.Show

Nat.Methods 9 834 839 (2012)

PMID: 22609626 DOI: 10.1038/nmeth.2033

Abstact

Although nearly half of today's major pharmaceutical drugs target human integral membrane proteins (hIMPs), only 30 hIMP structures are currently available in the Protein Data Bank, largely owing to inefficiencies in protein production. Here we describe a strategy for the rapid structure determination of hIMPs, using solution NMR spectroscopy with systematically labeled proteins produced via cell-free expression. We report new backbone structures of six hIMPs, solved in only 18 months from 15 initial targets. Application of our protocols to an additional 135 hIMPs with molecular weight <30 kDa yielded 38 hIMPs suitable for structural characterization by solution NMR spectroscopy without additional optimization.

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Primary Citation of related structures