2LME image
Deposition Date 2011-11-30
Release Date 2012-11-07
Last Version Date 2024-05-15
Entry Detail
PDB ID:
2LME
Keywords:
Title:
Solid-state NMR structure of the membrane anchor domain of the trimeric autotransporter YadA
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
400
Conformers Submitted:
20
Selection Criteria:
Highest posterior probability
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Adhesin yadA
Gene (Uniprot):yadA
Chain IDs:A, B, C
Chain Length:105
Number of Molecules:3
Biological Source:Yersinia enterocolitica subsp. enterocolitica
Ligand Molecules
Primary Citation
Membrane-protein structure determination by solid-state NMR spectroscopy of microcrystals.
Nat.Methods 9 1212 1217 (2012)
PMID: 23142870 DOI: 10.1038/nmeth.2248

Abstact

Membrane proteins are largely underrepresented among available atomic-resolution structures. The use of detergents in protein purification procedures hinders the formation of well-ordered crystals for X-ray crystallography and leads to slower molecular tumbling, impeding the application of solution-state NMR. Solid-state magic-angle spinning NMR spectroscopy is an emerging method for membrane-protein structural biology that can overcome these technical problems. Here we present the solid-state NMR structure of the transmembrane domain of the Yersinia enterocolitica adhesin A (YadA). The sample was derived from crystallization trials that yielded only poorly diffracting microcrystals. We solved the structure using a single, uniformly (13)C- and (15)N-labeled sample. In addition, solid-state NMR allowed us to acquire information on the flexibility and mobility of parts of the structure, which, in combination with evolutionary conservation information, presents new insights into the autotransport mechanism of YadA.

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Primary Citation of related structures