ISDA

Deposition Date 2011-11-22

Release Date 2012-01-04

Last Version Date 2024-05-15

Entry Detail

PDB ID:

2LM4

Keywords:

PROTEIN BINDING

Title:

Solution NMR Structure of mitochondrial succinate dehydrogenase assembly factor 2 from Saccharomyces cerevisiae, Northeast Structural Genomics Consortium Target YT682A

Biological Source:

Source Organism:

Saccharomyces cerevisiae (Taxon ID: 559292)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

SOLUTION NMR

Conformers Calculated:

100

Conformers Submitted:

Selection Criteria:

target function

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Succinate dehydrogenase assembly factor 2, mitochondrial
Gene (Uniprot):SDH5
Chain IDs:A
Chain Length:109
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae

UniProt ID:Q08230 Pfam ID:PF03937

Ligand Molecules

Primary Citation

Solution NMR structure of yeast succinate dehydrogenase flavinylation factor sdh5 reveals a putative sdh1 binding site.

Eletsky, A, Jeong, M.Y, Kim, H, Lee, H.W, Xiao, R, Pagliarini, D.J, Prestegard, J.H, Winge, D.R, Montelione, G.T, Szyperski, T.Show

Biochemistry 51 8475 8477 (2012)

PMID: 23062074 DOI: 10.1021/bi301171u

Abstact

The yeast mitochondrial protein Sdh5 is required for the covalent attachment of flavin adenine dinucleotide (FAD) to protein Sdh1, a subunit of the heterotetrameric enzyme succinate dehydrogenase. The NMR structure of Sdh5 represents the first eukaryotic structure of Pfam family PF03937 and reveals a conserved surface region, which likely represents a putative Sdh1-Sdh5 interaction interface. Point mutations in this region result in the loss of covalent flavinylation of Sdh1. Moreover, chemical shift perturbation measurements showed that Sdh5 does not bind FAD in vitro, indicating that it is not a simple cofactor transporter in vivo.

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Primary Citation of related structures