2LLP image
Deposition Date 2011-11-15
Release Date 2012-05-30
Last Version Date 2024-05-01
Entry Detail
PDB ID:
2LLP
Title:
Solution structure of a THP type 1 alpha 1 collagen fragment (772-786)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Conformers Calculated:
900
Conformers Submitted:
30
Selection Criteria:
structures with the least restraint violations
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Collagen alpha-1(I) chain
Gene (Uniprot):COL1A1
Chain IDs:A, B, C
Chain Length:18
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural basis for matrix metalloproteinase 1-catalyzed collagenolysis.
J.Am.Chem.Soc. 134 2100 2110 (2012)
PMID: 22239621 DOI: 10.1021/ja208338j

Abstact

The proteolysis of collagen triple-helical structure (collagenolysis) is a poorly understood yet critical physiological process. Presently, matrix metalloproteinase 1 (MMP-1) and collagen triple-helical peptide models have been utilized to characterize the events and calculate the energetics of collagenolysis via NMR spectroscopic analysis of 12 enzyme-substrate complexes. The triple-helix is bound initially by the MMP-1 hemopexin-like (HPX) domain via a four amino acid stretch (analogous to type I collagen residues 782-785). The triple-helix is then presented to the MMP-1 catalytic (CAT) domain in a distinct orientation. The HPX and CAT domains are rotated with respect to one another compared with the X-ray "closed" conformation of MMP-1. Back-rotation of the CAT and HPX domains to the X-ray closed conformation releases one chain out of the triple-helix, and this chain is properly positioned in the CAT domain active site for subsequent hydrolysis. The aforementioned steps provide a detailed, experimentally derived, and energetically favorable collagenolytic mechanism, as well as significant insight into the roles of distinct domains in extracellular protease function.

Legend

Protein

Chemical

Disease

Primary Citation of related structures