2LIY image
Deposition Date 2011-09-02
Release Date 2012-09-05
Last Version Date 2024-10-30
Entry Detail
PDB ID:
2LIY
Keywords:
Title:
Plant peptide hormone regulating stomatal density
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
96
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:EPIDERMAL PATTERNING FACTOR-like protein 9
Gene (Uniprot):EPFL9
Chain IDs:A
Chain Length:45
Number of Molecules:1
Biological Source:Arabidopsis thaliana
Ligand Molecules
Primary Citation
The NMR structure of stomagen reveals the basis of stomatal density regulation by plant peptide hormones
Nat Commun 2 512 512 (2011)
PMID: 22027592 DOI: 10.1038/ncomms1520

Abstact

Stomatal development in plants is regulated by defensin-like secretory epidermal patterning factor (EPF) peptide hormones. Only one of these, stomagen, is a positive regulator, whereas EPF1, EPF2, and possibly others are negative regulators. Here we explore the structure-function relationships of EPFs, by integrating NMR and semi-in vitro stomagen experiments. We show that stomagen is composed of a loop and a scaffold containing three disulphide bonds. A mutant composed of the stomagen loop and the EPF2 scaffold positively regulates the stomatal density on Arabidopsis cotyledons. The reciprocal mutant composed of the EPF2 loop and the stomagen scaffold acts negatively. Deletion of the disulphide bond introduces unfolding and inactivity. Our results suggest that the loop confers the functional specificity of EPFs and that the scaffold is structurally required for their activity. This structural decomposition approach to elucidating the functional site could be adapted for the analysis of other cysteine-rich peptide families.

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Primary Citation of related structures