2L9H image
Deposition Date 2011-02-09
Release Date 2011-06-22
Last Version Date 2024-11-27
Entry Detail
PDB ID:
2L9H
Keywords:
Title:
Oligomeric Structure of the Chemokine CCL5/RANTES from NMR, MS, and SAXS Data
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
1
Conformers Submitted:
1
Selection Criteria:
target function based on SAXS & knowledge-based potential
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:C-C motif chemokine 5
Gene (Uniprot):CCL5
Chain IDs:A, B, C, D
Chain Length:68
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Oligomeric Structure of the Chemokine CCL5/RANTES from NMR, MS, and SAXS Data.
Structure 19 1138 1148 (2011)
PMID: 21827949 DOI: 10.1016/j.str.2011.06.001

Abstact

CCL5 (RANTES) is a proinflammatory chemokine known to activate leukocytes through its receptor, CCR5. Although the monomeric form of CCL5 is sufficient to cause cell migration in vitro, CCL5's propensity for aggregation is essential for migration in vivo, T cell activation and apoptosis, and HIV entry into cells. However, there is currently no structural information on CCL5 oligomers larger than the canonical CC chemokine dimer. In this study the solution structure of a CCL5 oligomer was investigated using an integrated approach, including NMR residual dipolar couplings to determine allowed relative orientations of the component monomers, SAXS to restrict overall shape, and hydroxyl radical footprinting and NMR cross-saturation experiments to identify interface residues. The resulting model of the CCL5 oligomer provides a basis for explaining the disaggregating effect of E66 and E26 mutations and suggests mechanisms by which glycosaminoglycan binding may promote oligomer formation and facilitate cell migration in vivo.

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Primary Citation of related structures