2L4D image
Deposition Date 2010-10-04
Release Date 2011-01-26
Last Version Date 2024-11-06
Entry Detail
PDB ID:
2L4D
Title:
cytochrome c domain of pp3183 protein from Pseudomonas putida
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
20
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SCO1/SenC family protein/cytochrome c
Gene (Uniprot):PP_3183
Chain IDs:A
Chain Length:110
Number of Molecules:1
Biological Source:Pseudomonas putida
Ligand Molecules
Primary Citation
Sco proteins are involved in electron transfer processes
J.Biol.Inorg.Chem. 16 391 403 (2011)
PMID: 21181421 DOI: 10.1007/s00775-010-0735-x

Abstact

Sco proteins are widespread in eukaryotic and in many prokaryotic organisms. They have a thioredoxin-like fold and bind a single copper(I) or copper(II) ion through a CXXXC motif and a conserved His ligand, with both tight and weak affinities. They have been implicated in the assembly of the Cu(A) site of cytochrome c oxidase as copper chaperones and/or thioredoxins. In this work we have structurally characterized a Sco domain which is naturally fused with a typical electron transfer molecule, i.e., cytochrome c, in Pseudomonas putida. The thioredoxin-like Sco domain does not bind copper(II), binds copper(I) with weak affinity without involving the conserved His, and has redox properties consisting of a thioredoxin activity and of the ability of reducing copper(II) to copper(I), and iron(III) to iron(II) of the cytochrome c domain. These findings indicate that the His ligand coordination is the discriminating factor for introducing a metallochaperone function in a thioredoxin-like fold, typically responsible for electron transfer processes. A comparative structural analysis of the Sco domain from P. putida versus eukaryotic Sco proteins revealed structural determinants affecting the formation of a tight-affinity versus a weak-affinity copper binding site in Sco proteins.

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