2KZT image
Deposition Date 2010-06-24
Release Date 2011-03-16
Last Version Date 2024-05-01
Entry Detail
PDB ID:
2KZT
Keywords:
Title:
Structure of the Tandem MA-3 Region of Pdcd4
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
200
Conformers Submitted:
73
Selection Criteria:
acceptable RMSD to lowest HADDOCK score structure
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Programmed cell death protein 4
Gene (Uniprot):PDCD4
Chain IDs:A
Chain Length:163
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Programmed cell death protein 4
Gene (Uniprot):Pdcd4
Chain IDs:B
Chain Length:131
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structure of the tandem MA-3 region of Pdcd4 protein and characterization of its interactions with eIF4A and eIF4G: molecular mechanisms of a tumor suppressor
J.Biol.Chem. 286 17270 17280 (2011)
PMID: 21454508 DOI: 10.1074/jbc.M110.166157

Abstact

One of the key regulatory points of translation initiation is recruitment of the 43S preinitation complex to the 5' mRNA cap by the eIF4F complex (eIF4A, eIF4E, and eIF4G). The tumor suppressor protein Pdcd4 has been shown to inhibit cap-dependent translation by interacting tightly with the RNA helicase eIF4A via its tandem MA-3 domains. The NMR studies reported here reveal a fairly extensive and well defined interface between the two MA-3 domains in solution, which appears to be stabilized by a network of interdomain salt bridges and hydrogen bonds, and reveals a unique orientation of the two domains. Characterization of the stoichiometry of the Pdcd4-eIF4A complex suggests that under physiological conditions Pdcd4 binds to a single molecule of eIF4A, which involves contacts with both Pdcd4 MA-3 domains. We also show that contacts mediated by a conserved acidic patch on the middle MA-3 domain of Pdcd4 are essential for forming a tight complex with eIF4A in vivo, whereas the equivalent region of the C-terminal MA-3 domain appears to have no role in complex formation in vivo. The formation of a 1:1 eIF4A-Pdcd4 complex in solution is consistent with the reported presence in vivo of only one molecule of eIF4A in the eIF4F complex. Pdcd4 has also been reported to interact directly with the middle region of eIF4G, however, we were unable to obtain any evidence for even a weak, transient direct interaction.

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Primary Citation of related structures