2KUY image
Deposition Date 2010-03-01
Release Date 2011-05-04
Last Version Date 2024-11-20
Entry Detail
PDB ID:
2KUY
Title:
Structure of Glycocin F
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
20
Conformers Submitted:
12
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Prebacteriocin glycocin F
Gene (Uniprot):gccF
Chain IDs:A
Chain Length:43
Number of Molecules:1
Biological Source:Lactobacillus plantarum
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SER A SER GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Structural, dynamic, and chemical characterization of a novel s-glycosylated bacteriocin.
Biochemistry 50 2748 2755 (2011)
PMID: 21395300 DOI: 10.1021/bi200217u

Abstact

Bacteriocins are bacterial peptides with specific activity against competing species. They hold great potential as natural preservatives and for their probiotic effects. We show here nuclear magnetic resonance-based evidence that glycocin F, a 43-amino acid bacteriocin from Lactobacillus plantarum, contains two β-linked N-acetylglucosamine moieties, attached via side chain linkages to a serine via oxygen, and to a cysteine via sulfur. The latter linkage is novel and has helped to establish a new type of post-translational modification, the S-linked sugar. The peptide conformation consists primarily of two α-helices held together by a pair of nested disulfide bonds. The serine-linked sugar is positioned on a short loop sequentially connecting the two helices, while the cysteine-linked sugar presents at the end of a long disordered C-terminal tail. The differing chemical and conformational stabilities of the two N-actetylglucosamine moieties provide clues about the possible mode of action of this bacteriostatic peptide.

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Primary Citation of related structures