2KRI image
Deposition Date 2009-12-18
Release Date 2010-03-31
Last Version Date 2024-10-16
Entry Detail
PDB ID:
2KRI
Title:
Structure of a complex between domain V of beta2-glycoprotein I and the fourth ligand-binding module from LDLR determined with Haddock
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
200
Conformers Submitted:
1
Selection Criteria:
lowest haddock score
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Beta-2-glycoprotein 1
Gene (Uniprot):APOH
Chain IDs:A
Chain Length:85
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Low-density lipoprotein receptor
Gene (Uniprot):LDLR
Chain IDs:B
Chain Length:40
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Mode of interaction between beta2GPI and lipoprotein receptors suggests mutually exclusive binding of beta2GPI to the receptors and anionic phospholipids.
Structure 18 366 376 (2010)
PMID: 20223219 DOI: 10.1016/j.str.2009.12.013

Abstact

Lipoprotein receptors of the LDLR family serve as clearance receptors for beta2GPI and as signaling receptors for the beta2GPI/antibody complexes in antiphospholipid syndrome. We compared four ligand-binding LA modules from LDLR and ApoER2 for their ability to bind domain V of beta2GPI (beta2GPI-DV). We found that the LA modules capable of binding beta2GPI-DV interact with the same region on beta2GPI-DV using residues at their calcium-coordination site. The structure of a complex between beta2GPI-DV and LA4 of LDLR, solved by molecular docking guided by NMR-derived restraints and extensively validated, represents the general mode of interaction between beta2GPI and lipoprotein receptors. We have shown that beta2GPI-DV cannot simultaneously bind to lipoprotein receptors and anionic phospholipids, suggesting that the association of beta2GPI/anti-beta2GPI antibody complexes with anionic phospholipids will interfere with lipoprotein receptors' signaling in APS.

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Primary Citation of related structures