2KOX image
Deposition Date 2009-10-02
Release Date 2011-06-08
Last Version Date 2024-05-01
Entry Detail
PDB ID:
2KOX
Title:
NMR residual dipolar couplings identify long range correlated motions in the backbone of the protein ubiquitin
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
640
Conformers Submitted:
640
Selection Criteria:
all calculated structures submitted
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin
Chain IDs:A
Chain Length:76
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Weak Long-Range Correlated Motions in a Surface Patch of Ubiquitin Involved in Molecular Recognition
J.Am.Chem.Soc. ? ? ? (2011)
PMID: 21634390 DOI: 10.1021/ja200461n

Abstact

Long-range correlated motions in proteins are candidate mechanisms for processes that require information transfer across protein structures, such as allostery and signal transduction. However, the observation of backbone correlations between distant residues has remained elusive, and only local correlations have been revealed using residual dipolar couplings measured by NMR spectroscopy. In this work, we experimentally identified and characterized collective motions spanning four β-strands separated by up to 15 Å in ubiquitin. The observed correlations link molecular recognition sites and result from concerted conformational changes that are in part mediated by the hydrogen-bonding network.

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Primary Citation of related structures