2KOG image
Deposition Date 2009-09-22
Release Date 2009-12-01
Last Version Date 2024-05-22
Entry Detail
PDB ID:
2KOG
Title:
lipid-bound synaptobrevin solution NMR structure
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Vesicle-associated membrane protein 2
Gene (Uniprot):Vamp2
Chain IDs:A
Chain Length:119
Number of Molecules:1
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
Dynamic structure of lipid-bound synaptobrevin suggests a nucleation-propagation mechanism for trans-SNARE complex formation.
Proc.Natl.Acad.Sci.USA 106 20306 20311 (2009)
PMID: 19918058 DOI: 10.1073/pnas.0908317106

Abstact

The synaptic vesicle protein synaptobrevin engages with syntaxin and SNAP-25 to form the SNARE complex, which drives membrane fusion in neuronal exocytosis. In the SNARE complex, the SNARE motif of synaptobrevin forms a 55-residue helix, but it has been assumed to be mostly unstructured in its prefusion form. NMR data for full-length synaptobrevin in dodecylphosphocholine micelles reveals two transient helical segments flanked by natively disordered regions and a third more stable helix. Transient helix I comprises the most N-terminal part of the SNARE motif, transient helix II extends the SNARE motif into the juxtamembrane region, and the more stable helix III is the transmembrane domain. These helices may have important consequences for SNARE complex folding and fusion: helix I likely forms a nucleation site, the C-terminal disordered SNARE motif may act as a folding arrest signal, and helix II likely couples SNARE complex folding and fusion.

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Primary Citation of related structures