2KMJ image
Deposition Date 2009-07-30
Release Date 2009-08-18
Last Version Date 2024-11-27
Entry Detail
PDB ID:
2KMJ
Keywords:
RNA/PEPTIDE
Title:
High resolution NMR solution structure of a complex of HIV-2 TAR RNA and a synthetic tripeptide in a 1:2 stoichiometry
Biological Source:
Source Organism:
Human immunodeficiency virus 2 (Taxon ID: 11709)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
SOLUTION NMR
Conformers Calculated:
200
Conformers Submitted:
10
Selection Criteria:
Top-ranked ensemble
2KMJ validation report
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:RNA (28-MER)
Chain IDs:A
Chain Length:28
Number of Molecules:1
Biological Source:Human immunodeficiency virus 2
Protein Blast
Polymer Type:polypeptide(D)
Molecule:Pyrimidinylpeptide
Chain IDs:B, C
Chain Length:4
Number of Molecules:2
Biological Source:
Ligand Molecules
NA
Primary Citation
Structures of HIV TAR RNA-ligand complexes reveal higher binding stoichiometries.
Chembiochem 10 1490 1494 (2009)
PMID: 19444830 DOI: 10.1002/cbic.200900220

Abstact

Target TAR by NMR: Tripeptides containing arginines as terminal residues and non-natural amino acids as central residues are good leads for drug design to target the HIV trans-activation response element (TAR). The structural characterization of the RNA-ligand complex by NMR spectroscopy reveals two specific binding sites that are located at bulge residue U23 and around the pyrimidine-stretch U40-C41-U42 directly adjacent to the bulge.

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Primary Citation of related structures
2KMJ