2KLH image
Deposition Date 2009-07-02
Release Date 2009-10-20
Last Version Date 2024-05-29
Entry Detail
PDB ID:
2KLH
Keywords:
Title:
NMR Structure of RCL in complex with GMP
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
10
Conformers Submitted:
10
Selection Criteria:
structures with the least restraint violations
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:c-Myc-responsive protein Rcl
Gene (Uniprot):Dnph1
Mutagens:D69A
Chain IDs:A, B
Chain Length:152
Number of Molecules:2
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
Structural characterization of the mammalian deoxynucleotide N-hydrolase Rcl and its stabilizing interactions with two inhibitors
J.Mol.Biol. 394 435 447 (2009)
PMID: 19822152 DOI: 10.1016/j.jmb.2009.10.004

Abstact

The gene Rcl encodes a deoxynucleoside 5'-monophosphate N-glycosidase that catalyzes the hydrolysis of the N-glycosidic bond of the nucleotide to give deoxyribose 5-phosphate and a nucleobase, preferentially a purine. This enzyme is over-expressed in several cancers, and its rate of expression is correlated to the degree of aggressiveness of tumors, which makes it a new and attractive therapeutic target. We describe here its structural characterization in the presence of two inhibitory substrate mimics. One of these ligands corresponds to the monophosphorylated form of acyclovir, which is used in the clinic. This study reveals an important ligand-induced stabilization of the dimer structure of the enzyme. The original structural features of Rcl will be helpful for designing new inhibitors.

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Disease

Primary Citation of related structures
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