2KIZ image
Deposition Date 2009-05-13
Release Date 2010-05-19
Last Version Date 2024-11-06
Entry Detail
PDB ID:
2KIZ
Title:
Solution structure of Arkadia RING-H2 finger domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
31
Conformers Submitted:
31
Selection Criteria:
target function
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase Arkadia
Gene (Uniprot):RNF111
Chain IDs:A
Chain Length:69
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
NMR-based insights into the conformational and interaction properties of Arkadia RING-H2 E3 Ub ligase.
Proteins 80 1484 1489 (2012)
PMID: 22411132 DOI: 10.1002/prot.24048

Abstact

Arkadia (Rnf111), an E3 Ubiquitin (Ub) ligase, amplifies TGF-β signaling responses by targeting for degradation of the negative regulators Smad6/7 and the SnoN/Ski transcriptional repressors when they block the TGF-β effectors Smad2/3. The E3 ligase activity of Arkadia depends on its C-terminal RING-H2 domain that constitutes the docking site for the E2 Ub-conjugating enzyme carrying the activated Ub. We determined the nuclear magnetic resonance solution structure of Arkadia's RING-H2 domain and revealed a (β)ββα fold, fully consistent with the expected "cross-brace" mode of Zn(II)-ligation. In addition, the interaction of the Arkadia RING-H2 domain with its E2 partner enzyme (UbcH5b) was examined through chemical shift perturbation. Proteins 2012. © 2012 Wiley Periodicals, Inc.

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Primary Citation of related structures