2KDC image
Deposition Date 2009-01-06
Release Date 2009-07-07
Last Version Date 2024-05-22
Entry Detail
PDB ID:
2KDC
Keywords:
Title:
NMR Solution Structure of E. coli diacylglycerol kinase (DAGK) in DPC micelles
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
48
Conformers Submitted:
16
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Diacylglycerol kinase
Gene (Uniprot):dgkA
Chain IDs:A, B, C
Chain Length:121
Number of Molecules:3
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Solution nuclear magnetic resonance structure of membrane-integral diacylglycerol kinase
Science 324 1726 1729 (2009)
PMID: 19556511 DOI: 10.1126/science.1171716

Abstact

Escherichia coli diacylglycerol kinase (DAGK) represents a family of integral membrane enzymes that is unrelated to all other phosphotransferases. We have determined the three-dimensional structure of the DAGK homotrimer with the use of solution nuclear magnetic resonance. The third transmembrane helix from each subunit is domain-swapped with the first and second transmembrane segments from an adjacent subunit. Each of DAGK's three active sites resembles a portico. The cornice of the portico appears to be the determinant of DAGK's lipid substrate specificity and overhangs the site of phosphoryl transfer near the water-membrane interface. Mutations to cysteine that caused severe misfolding were located in or near the active site, indicating a high degree of overlap between sites responsible for folding and for catalysis.

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Primary Citation of related structures