2KBJ image
Entry Detail
PDB ID:
2KBJ
Keywords:
Title:
solution structure of BmKalphaTx11 (minor conformation)
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2008-11-28
Release Date:
2009-12-08
Method Details:
Experimental Method:
Conformers Calculated:
200
Conformers Submitted:
15
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Toxin Bmka2
Chain IDs:A
Chain Length:66
Number of Molecules:1
Biological Source:Mesobuthus martensii
Ligand Molecules
Primary Citation
Solution structure of BmKalphaTx11, a toxin from the venom of the Chinese scorpion Buthus martensii Karsch
Biochem.Biophys.Res.Commun. 391 627 633 (2010)
PMID: 19932686 DOI: 10.1016/j.bbrc.2009.11.110

Abstact

The solution structure of BmKalphaTx11 presented by this paper is distinctive from any other structures of wide-type scorpion alpha-toxins reported so far, for its trans-9,10 peptide bond conformation is accompanied by 'protruding' topology of the 'NC-domain'. The orientation of the C-tail of BmKalphaTx11 is obviously different from that of classical alpha-toxins (e.g., AaH2, BmK-M8), despite the fact that they share common trans conformation of peptide bond between residues 9 and 10. Accordingly, there must be other structural factors dominating the orientation of the C-tail except the conformation of peptide bond 9-10. Our study reveals that residues at position 58 play an important role in it, and different type of residues at this position (e.g., Lys, Arg, Met, Ile) result in different spatial relationship between the C-terminus and the 'five-residue-turn' and then different topology of the 'NC-domain', therefore residues at position 58 are believed to function as structure and bioactivity switch for specificity of scorpion alpha-toxins. The mechanism for stabilizing the geometry of the 'NC-domain' in wide-type scorpion alpha-toxins is also discussed.

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