2K9F image
Entry Detail
PDB ID:
2K9F
Keywords:
Title:
Structural features of the complex between the DsbD N-terminal and the PilB N-terminal domains from Neisseria meningitidis
Biological Source:
PDB Version:
Deposition Date:
2008-10-09
Release Date:
2009-05-19
Method Details:
Experimental Method:
Conformers Calculated:
300
Conformers Submitted:
10
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Thioredoxin
Chain IDs:A
Chain Length:144
Number of Molecules:1
Biological Source:Neisseria meningitidis serogroup A
Polymer Type:polypeptide(L)
Description:Thiol:disulfide interchange protein dsbD
Mutations:C102S
Chain IDs:B
Chain Length:128
Number of Molecules:1
Biological Source:Neisseria meningitidis serogroup B
Ligand Molecules
Primary Citation
Formation of the complex between DsbD and PilB N-terminal domains from Neisseria meningitidis necessitates an adaptability of nDsbD.
Structure 17 1024 1033 (2009)
PMID: 19604482 DOI: 10.1016/j.str.2009.05.011

Abstact

DsbD transmembrane protein dispatches electrons to periplasmic Trx/DsbE-like partners via specific interactions with its N-terminal domain, nDsbD. In the present study, PilB N-terminal domain (NterPilB) is shown to efficiently accept electrons coming from nDsbD from Neisseria meningitidis. Using an NMR-driven docking approach, we have modeled the structure of a mixed disulfide complex between NterPilB and nDsbD. We show the needed opening of nDsbD cap-loop whereas NterPilB FLHE loop does not seem essential in the formation and stabilization of the complex. Relaxation analysis performed on backbone amide groups highlights a kind of dynamics transfer from nDsbD cap-loop on NterPilB alpha1 helix, suggesting that a mobility contribution is required not only for the formation of the mixed disulfide complex, but also for its disruption. Taking into account previous X-ray data on covalent complexes involving nDsbD, a cartoon of interactions between Trx-like partners and nDsbD is proposed that illustrates the adaptability of nDsbD.

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