2K6D image
Deposition Date 2008-07-07
Release Date 2008-08-19
Last Version Date 2024-05-01
Entry Detail
PDB ID:
2K6D
Title:
CIN85 Sh3-C domain in complex with ubiquitin
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
50
Conformers Submitted:
8
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:SH3 domain-containing kinase-binding protein 1
Gene (Uniprot):SH3KBP1
Chain IDs:A
Chain Length:62
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Ubiquitin
Chain IDs:B
Chain Length:76
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Interactions between the three CIN85 SH3 domains and ubiquitin: implications for CIN85 ubiquitination.
Biochemistry 47 8937 8949 (2008)
PMID: 18680311 DOI: 10.1021/bi800439t

Abstact

CIN85 is an adaptor protein linking the ubiquitin ligase Cbl and clathrin-binding proteins in clathrin-mediated receptor endocytosis. The SH3 domains of CIN85 bind to a proline-rich region of Cbl. Here we show that all three SH3 domains of CIN85 bind to ubiquitin. We also present a data-based structural model of the CIN85 SH3-C domain in complex with ubiquitin. In this complex, ubiquitin binds to the canonical interaction surface of the SH3 domain for proline-rich ligands and mimics the PPII helix, and we provide evidence that ubiquitin competes with these ligands for binding. We demonstrate that disruption of ubiquitin binding results in constitutive ubiquitination of CIN85 and an increased level of ubiquitination of EGFR in the absence of EGF stimulation. These results suggest that competition between Cbl and ubiquitin binding to CIN85 regulates Cbl function and EGFR endocytosis.

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Primary Citation of related structures