2K4D image
Deposition Date 2008-06-06
Release Date 2009-01-20
Last Version Date 2024-10-30
Entry Detail
PDB ID:
2K4D
Keywords:
Title:
E2-c-Cbl recognition is necessary but not sufficient for ubiquitination activity
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
target function
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase CBL
Gene (Uniprot):CBL
Chain IDs:A
Chain Length:83
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
E2-c-Cbl recognition is necessary but not sufficient for ubiquitination activity
J.Mol.Biol. 385 507 519 (2009)
PMID: 18996392 DOI: 10.1016/j.jmb.2008.10.044

Abstact

The E2 ubiquitin-conjugating enzymes UbcH7 and UbcH5B both show specific binding to the RING (really interesting new gene) domain of the E3 ubiquitin-protein ligase c-Cbl, but UbcH7 hardly supports ubiquitination of c-Cbl and substrate in a reconstituted system. Here, we found that neither structural changes nor subtle differences in the E2-E3 interaction surface are possible explanations for the functional specificity of UbcH5B and UbcH7 in their interaction with c-Cbl. The quick transfer of ubiquitin from the UbcH5B-Ub thioester to c-Cbl or other ubiquitin acceptors suggests that UbcH5B might functionally be a relatively pliable E2 enzyme. In contrast, the UbcH7-Ub thioester is too stable to transfer ubiquitin under our assay conditions, indicating that UbcH7 might be a more specific E2 enzyme. Our results imply that the interaction specificity between c-Cbl and E2 is required but not sufficient for transfer of ubiquitin to potential targets.

Legend

Protein

Chemical

Disease

Primary Citation of related structures