2K46 image
Deposition Date 2008-05-28
Release Date 2008-08-12
Last Version Date 2024-05-01
Entry Detail
PDB ID:
2K46
Title:
Xenopus laevis malectin complexed with nigerose (Glcalpha1-3Glc)
Biological Source:
Source Organism:
Xenopus laevis (Taxon ID: )
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:MGC80075 protein
Gene (Uniprot):mlec-a
Chain IDs:A
Chain Length:190
Number of Molecules:1
Biological Source:Xenopus laevis
Ligand Molecules
Peptide-like Molecules
PRD_900052
Primary Citation
Malectin: A Novel Carbohydrate-binding Protein of the Endoplasmic Reticulum and a Candidate Player in the Early Steps of Protein N-Glycosylation
Mol.Cell.Biol. 19 3404 3414 (2008)
PMID: 18524852 DOI: 10.1091/mbc.E08-04-0354

Abstact

N-Glycosylation starts in the endoplasmic reticulum (ER) where a 14-sugar glycan composed of three glucoses, nine mannoses, and two N-acetylglucosamines (Glc(3)Man(9)GlcNAc(2)) is transferred to nascent proteins. The glucoses are sequentially trimmed by ER-resident glucosidases. The Glc(3)Man(9)GlcNAc(2) moiety is the substrate for oligosaccharyltransferase; the Glc(1)Man(9)GlcNAc(2) and Man(9)GlcNAc(2) intermediates are signals for glycoprotein folding and quality control in the calnexin/calreticulin cycle. Here, we report a novel membrane-anchored ER protein that is highly conserved in animals and that recognizes the Glc(2)-N-glycan. Structure determination by nuclear magnetic resonance showed that its luminal part is a carbohydrate binding domain that recognizes glucose oligomers. Carbohydrate microarray analyses revealed a uniquely selective binding to a Glc(2)-N-glycan probe. The localization, structure, and binding specificity of this protein, which we have named malectin, open the way to studies of its role in the genesis, processing and secretion of N-glycosylated proteins.

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Primary Citation of related structures