2JZK image
Deposition Date 2008-01-09
Release Date 2008-03-25
Last Version Date 2024-05-29
Entry Detail
PDB ID:
2JZK
Title:
Structure of TbCVNH (T. BORCHII CVNH)
Biological Source:
Source Organism:
Tuber borchii (Taxon ID: 42251)
Method Details:
Experimental Method:
Conformers Calculated:
800
Conformers Submitted:
30
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cyanovirin-N homolog
Chain IDs:A
Chain Length:106
Number of Molecules:1
Biological Source:Tuber borchii
Ligand Molecules
Primary Citation
The evolutionarily conserved family of cyanovirin-N homologs: structures and carbohydrate specificity.
Structure 16 570 584 (2008)
PMID: 18400178 DOI: 10.1016/j.str.2008.01.015

Abstact

Solution structures for three members of the recently discovered cyanovirin-N (CV-N) homolog family of lectins have been determined. Cyanovirin-N homologs (CVNHs) from Tuber borchii, Ceratopteris richardii, and Neurospora crassa, representing each of the three phylogenetic groups, were selected. All proteins exhibit the same fold, and the overall structures resemble that of the founding member of the family, CV-N, albeit with noteworthy differences in loop conformation and detailed local structure. Since no data are available regarding the proteins' function or their natural ligands, extensive carbohydrate-binding studies were conducted. We delineated ligand-binding sites on all three proteins by nuclear magnetic resonance and identified which sugars interact by array screening. The number and location of binding sites vary for the three proteins, and different ligand specificities exist. Potential physiological roles for two family members, TbCVNH and NcCVNH, were probed in nutrition deprivation experiments that suggest a possible involvement of these proteins in lifestyle-related responses.

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Primary Citation of related structures