2JZ7 image
Deposition Date 2007-12-28
Release Date 2008-07-22
Last Version Date 2024-05-29
Entry Detail
PDB ID:
2JZ7
Title:
Solution NMR structure of selenium-binding protein from Methanococcus Vannielii
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
10
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Selenium binding protein
Gene (Uniprot):sbp
Chain IDs:A, B, C, D, E
Chain Length:81
Number of Molecules:5
Biological Source:Methanococcus vannielii
Ligand Molecules
Primary Citation
Solution NMR Structure of Selenium-binding Protein from Methanococcus vannielii.
J.Biol.Chem. 283 25936 25943 (2008)
PMID: 18650445 DOI: 10.1074/jbc.M803773200

Abstact

Selenium is an important nutrient. The lack of selenium will suppress expression of various enzymes that will lead to cell abnormality and diseases. However, high concentrations of free selenium are toxic to the cell because it adversely affects numerous cell metabolic pathways. In Methanococcus vannielii, selenium transport in the cell is established by the selenium-binding protein, SeBP. SeBP sequesters selenium during transport, thus regulating the level of free selenium in the cell, and delivers it specifically to the selenophosphate synthase enzyme. In solution, SeBP is an oligomer of 8.8-kDa subunits. It is a symmetric pentamer. The solution structure of SeBP was determined by NMR spectroscopy. Each subunit of SeBP is composed of an alpha-helix on top of a 4-stranded twisted beta-sheet. The stability of the five subunits stems mainly from hydrophobic interactions and supplemented by hydrogen bond interactions. The loop containing Cys(59) has been shown to be important for selenium binding, is flexible, and adopts multiple conformations. However, the cysteine accessibility is restricted in the structure, reducing the possibility of the binding of free selenium readily. Therefore, a different selenium precursor or other factors might be needed to facilitate opening of this loop to expose Cys(59) for selenium binding.

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Primary Citation of related structures