2JQ2 image
Deposition Date 2007-05-28
Release Date 2007-10-16
Last Version Date 2024-05-08
Entry Detail
PDB ID:
2JQ2
Title:
NMR structure of the anticoccidial peptide PW2 in DPC micelles
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
18
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:pw2
Chain IDs:A
Chain Length:12
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Effect of micelle interface on the binding of anticoccidial PW2 peptide
J.Biomol.Nmr 39 315 322 (2007)
PMID: 17926009 DOI: 10.1007/s10858-007-9202-6

Abstact

PW2 is an anticoccidial peptide active against Eimeria acervulina and Eimeria tenella. We determined the structure of PW2 in dodecylphosphocholine micelles. The structure showed two distinct regions: an amphipathic N-terminal 3(10) helix and an aromatic region containing WWR interface-binding motif. The aromatic region acted as a scaffold of the protein in the interface and shared the same structure in both DPC and SDS micelles. N-terminal helix interacted with DPC but not with SDS interface. Chemical shift change was slow when SDS was added to PW2 in DPC and fast when DPC was added to PW2 in SDS, indicating that interaction with DPC micelles was kinetically more stable than with SDS micelles. Also, DPC interface was able to accommodate PW2, but it maintained the conformational arrangement in the aromatic region observed for SDS micelles. This behavior, which is different from that observed for other antimicrobial peptides with WWR motif, may be associated with the absence of PW2 antibacterial activity and its selectivity for Eimeria parasites.

Legend

Protein

Chemical

Disease

Primary Citation of related structures