2JNV image
Deposition Date 2007-02-06
Release Date 2007-12-18
Last Version Date 2023-12-20
Entry Detail
PDB ID:
2JNV
Keywords:
Title:
Solution structure of C-terminal domain of NifU-like protein from Oryza sativa
Biological Source:
Source Organism:
Oryza sativa (Taxon ID: 4530)
Host Organism:
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
20
Selection Criteria:
target function
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NifU-like protein 1, chloroplast
Gene (Uniprot):NIFU1
Chain IDs:A
Chain Length:91
Number of Molecules:1
Biological Source:Oryza sativa
Ligand Molecules
Primary Citation
The cooperative role of OsCnfU-1A domain I and domain II in the iron sulphur cluster transfer process as revealed by NMR
J.Biochem.(Tokyo) 142 113 121 (2007)
PMID: 17545250 DOI: 10.1093/jb/mvm120

Abstact

OsCnfU-1A is a chloroplast-type Nfu-like protein that consists of tandem repeats sharing high sequence homology. Domain I of this protein, but not domain II, has a C-X-X-C motif that is thought to assemble an iron-sulphur cluster. Herein we report the solution structure of OsCnfU-1A domain I (73-153). Although OsCnfU-1A domain I is structurally similar to OsCnfU-1A domain II (154-226), the electrostatic surface potential of the 2 domains differs. Domain I has an acidic surface, whereas that of domain II is predominantly basic. Chemical shift perturbation studies on OsCnfU-1A domain I and domain II with ferredoxin revealed negligible chemical shift changes in domain I, whereas much larger chemical shift changes were observed in domain II. The residues with larger chemical shift changes were located on the basic surface of domain II. Considering that ferredoxin is predominantly negatively charged, we propose the following hypothesis: First, an iron-sulphur cluster is assembled on domain I. Next, domain II interacts with the ferredoxin, thus tethering domain I close to the ferredoxin. Finally, domain I transfers the iron-sulphur cluster to the ferredoxin. Thus, domain II facilitates the efficient transfer of the iron-sulphur cluster from domain I to the ferredoxin.

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Primary Citation of related structures
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