2JNR image
Deposition Date 2007-02-01
Release Date 2007-05-08
Last Version Date 2024-11-20
Entry Detail
PDB ID:
2JNR
Keywords:
Title:
Discovery and optimization of a natural HIV-1 entry inhibitor targeting the gp41 fusion peptide
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Conformers Calculated:
1
Conformers Submitted:
1
Selection Criteria:
all calculated structures submitted
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:VIR165
Chain IDs:A
Chain Length:20
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Molecule:ENV polyprotein
Gene (Uniprot):env
Chain IDs:B
Chain Length:23
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Discovery and Optimization of a Natural HIV-1 Entry Inhibitor Targeting the gp41 Fusion Peptide.
Cell(Cambridge,Mass.) 129 263 275 (2007)
PMID: 17448989 DOI: 10.1016/j.cell.2007.02.042

Abstact

A variety of molecules in human blood have been implicated in the inhibition of HIV-1. However, it remained elusive which circulating natural compounds are most effective in controlling viral replication in vivo. To identify natural HIV-1 inhibitors we screened a comprehensive peptide library generated from human hemofiltrate. The most potent fraction contained a 20-residue peptide, designated VIRUS-INHIBITORY PEPTIDE (VIRIP), corresponding to the C-proximal region of alpha1-antitrypsin, the most abundant circulating serine protease inhibitor. We found that VIRIP inhibits a wide variety of HIV-1 strains including those resistant to current antiretroviral drugs. Further analysis demonstrated that VIRIP blocks HIV-1 entry by interacting with the gp41 fusion peptide and showed that a few amino acid changes increase its antiretroviral potency by two orders of magnitude. Thus, as a highly specific natural inhibitor of the HIV-1 gp41 fusion peptide, VIRIP may lead to the development of another class of antiretroviral drugs.

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Primary Citation of related structures