2JKT image
Deposition Date 2008-08-29
Release Date 2008-10-28
Last Version Date 2024-11-13
Entry Detail
PDB ID:
2JKT
Keywords:
Title:
AP2 CLATHRIN ADAPTOR CORE with CD4 Dileucine peptide RM(phosphoS) EIKRLLSE Q to E mutant
Biological Source:
Source Organism:
MUS MUSCULUS (Taxon ID: 10090)
HOMO SAPIENS (Taxon ID: 9606)
RATTUS NORVEGICUS (Taxon ID: 10116)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.40 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:AP-2 COMPLEX SUBUNIT ALPHA-2
Gene (Uniprot):Ap2a2
Chain IDs:A, E (auth: L)
Chain Length:623
Number of Molecules:2
Biological Source:MUS MUSCULUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:AP-2 COMPLEX SUBUNIT BETA-1
Gene (Uniprot):AP2B1
Chain IDs:B, C (auth: E)
Chain Length:591
Number of Molecules:2
Biological Source:HOMO SAPIENS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:AP-2 COMPLEX SUBUNIT SIGMA-1
Gene (Uniprot):Ap2s1
Chain IDs:D (auth: I), I (auth: S)
Chain Length:142
Number of Molecules:2
Biological Source:MUS MUSCULUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:AP-2 COMPLEX SUBUNIT MU-1
Gene (Uniprot):Ap2m1
Chain IDs:F (auth: M), J (auth: U)
Chain Length:435
Number of Molecules:2
Biological Source:RATTUS NORVEGICUS
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CD4 PEPTIDE
Mutagens:YES
Chain IDs:G (auth: P), H (auth: Q)
Chain Length:11
Number of Molecules:2
Biological Source:HOMO SAPIENS
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP G SER PHOSPHOSERINE
Ligand Molecules
Primary Citation
A Structural Explanation for the Binding of Endocytic Dileucine Motifs by the Ap2 Complex.
Nature 456 976 ? (2008)
PMID: 19140243 DOI: 10.1038/NATURE07422

Abstact

Most transmembrane proteins are selected as transport vesicle cargo through the recognition of short, linear amino acid motifs in their cytoplasmic portions by vesicle coat proteins. In the case of clathrin-coated vesicles (CCVs) the motifs are recognised by clathrin adaptors. The AP2 adaptor complex (subunits α,β2,μ2,σ2) recognises both major endocytic motifs: YxxΦ motifs and [DE]xxxL[LI] acidic dileucine motifs. Here we describe the binding of AP2 to the endocytic dileucine motif from CD4 . The major recognition events are the two leucine residues binding in hydrophobic pockets on σ2. The hydrophilic residue four residues upstream from the first leucine sits on a positively charged patch made from residues on σ2 and α subunits. Mutations in key residues inhibit the binding of AP2 to ‘acidic dileucine’ motifs displayed in liposomes containing PtdIns4,5P2, but do not affect binding to YxxΦ motifs via μ2. In the ‘inactive’ AP2 core structure , both motif binding sites are blocked by different parts of the β2 subunit. To allow a dileucine motif to bind, the β2 N-terminus is displaced and becomes disordered; however, in this structure the YxxΦ binding site on μ2 remains blocked.

Legend

Protein

Chemical

Disease

Primary Citation of related structures